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[Wed Jun 13 17:02:53.365892 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: copy(files/journals/1//articles/983/attachment/983-1-3226-1-13-20180201.pdf): failed to open stream: No such file or directory in D:\xampp5.6\htdocs\des\lib\pkp\classes\file\FileManager.inc.php on line 159, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:53.448002 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: assert(): Assertion failed in D:\xampp5.6\htdocs\des\lib\pkp\classes\submission\SubmissionFileDAODelegate.inc.php on line 123, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:53.751203 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: copy(files/journals/1//articles/983/attachment/983-1-3227-3-13-20180201.pdf): failed to open stream: No such file or directory in D:\xampp5.6\htdocs\des\lib\pkp\classes\file\FileManager.inc.php on line 159, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:53.841265 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: assert(): Assertion failed in D:\xampp5.6\htdocs\des\lib\pkp\classes\submission\SubmissionFileDAODelegate.inc.php on line 123, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:54.197136 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: copy(files/journals/1//articles/1003/attachment/1003-1-3283-1-13-20180301.docx): failed to open stream: No such file or directory in D:\xampp5.6\htdocs\des\lib\pkp\classes\file\FileManager.inc.php on line 159, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:54.407080 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: assert(): Assertion failed in D:\xampp5.6\htdocs\des\lib\pkp\classes\submission\SubmissionFileDAODelegate.inc.php on line 123, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:54.736574 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: copy(files/journals/1//articles/1025/attachment/1025-1-3406-1-13-20180425.doc): failed to open stream: No such file or directory in D:\xampp5.6\htdocs\des\lib\pkp\classes\file\FileManager.inc.php on line 159, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:54.833018 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: assert(): Assertion failed in D:\xampp5.6\htdocs\des\lib\pkp\classes\submission\SubmissionFileDAODelegate.inc.php on line 123, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:55.060534 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: copy(files/journals/1//articles/420/submission/420-3-1468-2-2-20150218.txt): failed to open stream: No such file or directory in D:\xampp5.6\htdocs\des\lib\pkp\classes\file\FileManager.inc.php on line 159, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:55.381157 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: assert(): Assertion failed in D:\xampp5.6\htdocs\des\lib\pkp\classes\submission\SubmissionFileDAODelegate.inc.php on line 112, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:55.382157 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Warning: copy(files/journals/1//articles/420/submission/review/420-3–1-4-20150218.txt): failed to open stream: No such file or directory in D:\xampp5.6\htdocs\des\lib\pkp\classes\file\FileManager.inc.php on line 159, referer: http://127.0.0.1/des/index.php/index/install/upgrade
[Wed Jun 13 17:02:55.505681 2018] [:error] [pid 14936:tid 1760] [client 127.0.0.1:58684] PHP Fatal error: Call to a member function getFileId() on null in D:\xampp5.6\htdocs\des\lib\pkp\classes\submission\PKPSubmissionFileDAO.inc.php on line 1029, referer: http://127.0.0.1/des/index.php/index/install/upgrade
Hi @brunoskyny,
What version of OJS 3.x are you upgrading to?
Regards,
Alec Smecher
Public Knowledge Project Team
I am using the version 3.1.1-2
Hi @brunoskyny,
Can you restore your database and files directory from backup from prior to your upgrade attempt, then use the command-line upgrade tool? Post its full output here.
Regards,
Alec Smecher
Public Knowledge Project Team
Hi,
Same error here:
PHP Warning: assert(): Assertion failed in /files/www/revistas3/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 123
DB Error: ERROR: null value in column "file_id" violates not-null constraint
DETALHE: Failing row contains (144216, pt_BR, 122089, null, Sem tĂtulo, 6, URL remoto, 0). ojs2: DB Error: ERROR: null value in column “file_id” violates not-null constraint
DETALHE: Failing row contains (144216, pt_BR, 122089, null, Sem tĂtulo, 6, URL remoto, 0).
And postgres log:
2018-07-16 14:39:05 -03 [8587]: [1437-1] user=revistas,db=revistas ERROR: null value in column “file_id” violates not-null constraint
2018-07-16 14:39:05 -03 [8587]: [1438-1] user=revistas,db=revistas DETAIL: Failing row contains (144216, pt_BR, 122089, null, Sem tĂtulo, 6, URL remoto, 0).
2018-07-16 14:39:05 -03 [8587]: [1439-1] user=revistas,db=revistas STATEMENT: INSERT INTO submission_galleys
(submission_id, label, locale, seq, remote_url, file_id)
VALUES
( $1, $2, $3, $4, $5, $6)
And in my datase:
revistas=# select * from article_galleys where file_id is null;
galley_id | locale | article_id | file_id | label | html_galley | style_file_id | seq | remote_ur
l
-----------±-------±-----------±--------±------±------------±--------------±----±---------
–
(0 rows)
and
revistas=# select * from article_galleys where file_id =0;
galley_id | locale | article_id | file_id | label | html_galley | style_file_id | seq | remote_url
63095 | pt_BR | 40184 | 0 | Sem tĂtulo | 0 | | 1 |
78053 | pt_BR | 74431 | 0 | PDF | 0 | | 0 |
82616 | pt_BR | 68131 | 0 | Sem tĂtulo | 0 | | 0 |
86378 | pt_BR | 64500 | 0 | Remoto | 0 | | 1 | URL remoto
93510 | pt_BR | 90830 | 0 | Sem tĂtulo | 0 | | 0 |
102462 | pt_BR | 57046 | 0 | Sem tĂtulo | 0 | | 1 |
102463 | pt_BR | 57046 | 0 | Sem tĂtulo | 0 | | 2 |
102464 | pt_BR | 57046 | 0 | Sem tĂtulo | 0 | | 3 |
102465 | pt_BR | 57046 | 0 | Sem tĂtulo | 0 | | 4 |
102466 | pt_BR | 57046 | 0 | Sem tĂtulo | 0 | | 5 |
105895 | pt_BR | 107376 | 0 | Remoto | 0 | | 1 | URL remoto
106798 | pt_BR | 96139 | 0 | PDF | 0 | | 0 |
109365 | pt_BR | 110905 | 0 | Sem tĂtulo | 0 | | 7 |
109406 | pt_BR | 111081 | 0 | Sem tĂtulo | 0 | | 1 |
112184 | pt_BR | 98144 | 0 | Remoto | 0 | | 4 | URL remoto
112189 | pt_BR | 114313 | 0 | Remoto | 0 | | 1 | URL remoto
112191 | pt_BR | 114317 | 0 | Remoto | 0 | | 1 | URL remoto
114657 | pt_BR | 115376 | 0 | PDF | 0 | | 0 |
116382 | pt_BR | 118977 | 0 | HTML | 0 | | 0 |
136013 | pt_BR | 140836 | 0 | Remoto | 0 | | 0 | URL remoto
139808 | pt_BR | 144333 | 0 | Sem tĂtulo | 0 | | 0 |
138489 | pt_BR | 142035 | 0 | Sem tĂtulo | 0 | | 0 |
141055 | en_US | 147236 | 0 | Sem tĂtulo | 0 | | 1 |
140885 | pt_BR | 147162 | 0 | Sem tĂtulo | 0 | | 1 |
(24 rows)
Is it normal? file_id = 0?
Hi
For some reason my database have some entries in both table article_id and article_supplementary_files that have no real article in table articles.
Alec noticed that in Upgrade to OJS 3.0 from 2.4.8.0 - Error while converting supplementary files - #68 by Adriano_Jose
But I’m getting now:
[code: Installer Installer::provideSupplementaryFilesForReview]
PHP Fatal error: Call to a member function getFileId() on null in /files/www/revistas3/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 1029
Regards.
Hi all,
Regarding:
Call to a member function getFileId() on null in /ojs_temp/rc-3.1.1/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 1029
According to Change galley PDF published OJS 3.1.x - #8 by marc, reviewing the file permissions and re-running the upgrade corrected the issue.
Regards,
Alec Smecher
Public Knowledge Project Team
Oi @Tarcisio_Pereira, tudo bem?
VocĂŞ consiguiu fazer o upgrade de OJS 2.4 pro OJS 3.1? Estou tendo os mesmo problema que voce enfrentou:
PHP Fatal error: Call to a member function getFileId() on null in /var/www/html/ojs3/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 1065
vocĂŞ poderia me dizer o que fez pra solucionar esse erro? muito obrigado.
More people will benefit if I respond in english language.
In my case:
delete from article_files where file_id in (
select file_id from article_files af left join articles a on (af.article_id = a.article_id) where af.file_stage = 6 and (a.article_id is null or af.article_id is null)
);
delete from article_galleys where file_id is null;
delete from article_galleys where file_id = 0;
delete from article_supplementary_files where file_id is null;
delete from article_supplementary_files where file_id = 0;
delete from issue_galleys where file_id is null;
delete from issue_galleys where file_id = 0;
delete from notes where file_id is null;
delete from notes where file_id = 0;
And the most important is replace ojs-files folder with the version before the updating process.
OJS 3 moves the files in the directory structure, if you start upgrade with a half migrated directory you will get this error.
Regards,
Tarcisio Pereira
Hello
managed to solve?
lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 1029