Hello friends!
I have a problem with the process to upgrade OMP 3.1.2.4 to 3.2.0.0
First problem:
When i run upgrade.php in the end shows: DB: Column ‘publication_id’ cannot be null
I actived debug mode on
It shows:
I search how to fix this problem on:
opened 12:07AM - 04 Mar 20 UTC
closed 10:57AM - 09 Mar 20 UTC
**Describe the bug**
I'm trying to upgrade OMP from version 3.1.2-4 to 3.2.0. I… 've followed the steps in documentation like with other upgrades, I excecuted the script from command line and the proccess is broken with the message: 'ERROR: Upgrade failed: DB: Column 'publication_id' cannot be null', it referes to any sql query in file 'dbscripts/xml/upgrade/3.2.0_versioning.xml'
**To Reproduce**
Steps to reproduce the behavior:
1. Follow upgrade steps
2. Upgrade from command line with: `php tools/upgrade.php upgrade`
**What application are you using?**
OMP version 3.1.2-4
**Additional information**
Extract of lastest logs in the terminal:
[data: dbscripts/xml/upgrade/3.2.0_preupdate_email_templates.xml]
[data: dbscripts/xml/upgrade/3.2.0_preupdate_versioning.xml]
[data: dbscripts/xml/upgrade/3.2.0_preupdate_versioning_add_ps_seq.xml]
[data: dbscripts/xml/upgrade/3.2.0_preupdate_last_activity.xml]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/navigationMenus.xml]
[schema: lib/pkp/xml/schema/categories.xml]
[schema: dbscripts/xml/omp_schema.xml]
[code: Installer Installer::installDefaultNavigationMenus]
WARNING: The NavigationMenu (ContextId: 1, Title: User Navigation Menu, Area: user) will be skipped because the specified area has already a NavigationMenu attached.
WARNING: The NavigationMenu (ContextId: 1, Title: Primary Navigation Menu, Area: primary) will be skipped because the specified area has already a NavigationMenu attached.
WARNING: The NavigationMenu (ContextId: 0, Title: User Navigation Menu, Area: user) will be skipped because the specified area has already a NavigationMenu attached.
[code: Installer Installer::migrateStaticPagesToNavigationMenuItems]
[code: Installer Installer::migrateUserAndAuthorNames (skipped)]
[data: dbscripts/xml/upgrade/3.2.0_update.xml]
[data: dbscripts/xml/upgrade/3.2.0_stylesheet.xml]
[data: dbscripts/xml/upgrade/3.2.0_navigation_menu_items_locale_change.xml]
[code: Installer Installer::migrateSiteLocales]
[code: Installer Installer::migrateSidebarBlocks]
PHP Notice: Array to string conversion in /var/www/html/omp/lib/pkp/classes/install/Installer.inc.php on line 828
[code: Installer Installer::migrateMetadataSettings]
[code: Installer Installer::installEmailTemplate]
[code: Installer Installer::changeUserRolesAndStageAssignmentsForStagePermitSubmissionEdit]
[data: dbscripts/xml/upgrade/3.2.0_versioning.xml]
ERROR: Upgrade failed: DB: Column 'publication_id' cannot be null
When i do this consult: ```
SELECT COUNT(*) FROM authors a LEFT JOIN submissions s ON (a.submission_id = s.submission_id) WHERE s.submission_id IS NULL;
show 0
then i run this consult:
`SELECT` `pf.` `publication_id` `FROM ` `publication_formats` `` `pf` `LEFT JOIN submissions s ON (` `pf` `.submission_id
= s.submission_id) WHERE s.submission_id IS NULL;`
shows:
+----------------+
| publication_id |
+----------------+
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
| 0 |
+----------------+
16 rows in set (0.000 sec)
I dont know what i have to do
Second problem:
When i run upgrade.php
Shows a lot messages:
PHP Warning: copy(/dados/press_public//presses/1//monographs/595/simple/cover.jpg): failed to open stream: No such file or directory in /srv/www/sistema/teste5/lib/pkp/classes/file/FileManager.inc.php on line 181
When its happens, a lot of images disappear of files_dir and the page web doesnt have imagens
1 Like
Hi @BrunoCampos ,
Other users have reported this error on the forum when upgrading. Here’s one example:
When I run it on a fresh copy of the OJS 3.1.0-0 database I get:
SELECT c.citation_id FROM citations c LEFT JOIN submissions s ON (c.submission_id = s.submission_id) WHERE s.submission_id IS NULL;
ERROR 1054 (42S22): Unknown column 'c.submission_id' in 'on clause'
which is normal, since the citations table does not have the submission_id column yet (but it has the assoc_id one):
describe citations;
+----------------+-------------+------+-----+---------+----------------+
| Field | Typ…
Try searching “Publication_id Null Upgrade” on the forum and you’ll see a number of other relevant results that offer suggestions for what to try when facing this issue.
Best regards,
Roger
Friend, i did search all day and find nothing.
At this morning, i run this consult e it shows:
SELECT pf.publication_id FROM publication_formats pf LEFT JOIN submissions s ON (pf.publication_id = s.submission_id) WHERE s.submission_id IS NULL;
I dont know what i have to do
1 Like
fairuz
February 23, 2021, 1:24am
4
Agree with you sir. I hope they will share the solutions. Not keywords " Publication_id Null Upgrade "
Friends, i update my database! Thanks!
2 Likes