Are you sure that you are using OJS 3.2? The latest production release is 3.1.1-2.
As I remember sysplugins directory appears only from Smarty 3 and the latest Smarty version in a current OJS release is 2.6. Obviously, those themes are not supporting Smarty 3 (yet). From where you get this OJS release?
Yes I’m running 3.2, my DockerFile clones the OJS repository to get the most recent version. Is there a release branch for the OJS github repository that I can use to get the most recent version, or should I stick to the 3.1.1 branch?