[OJS3, XML] Display of XML Footnotes (<fn-group>, <fn>) with eLens

twa · November 6, 2016, 7:23am

How do I tag footnotes so they are displayed with the build-in eLens Viewer? and do not work.

Thanks for your kind suggestions, Tobias

asmecher · November 6, 2016, 6:57pm

I think your question is related to the eLens Viewer, not OJS itself – we don’t maintain that, so you’d probably be best served asking the eLife Lens team.

Regards,
Alec Smecher
Public Knowledge Project Team

ajnyga · April 11, 2017, 2:53pm

Hi,

The latest lens does support footnotes. It takes a little effort to be able to output the lens.js file required using the latest develop branch of lens, but if someone needs it, I have one ready.

hannanhazari · May 14, 2017, 10:45am

@ajnyga
Can you please share the code.

ajnyga · May 14, 2017, 11:15am

I have it here: GitHub - ajnyga/lensGalley: Galley viewer plugin integrating eLife Lens for OJS 3.0: fork using the latest develop branch of Lens

twa · September 23, 2020, 3:18pm

@ajnyga Can you describe, how to integrate refs? Your github lensGalley seems to be outdated.

I already installed the latest eLife Lens Viewer (2.0.0) in OJS, but it doesn’t seem to work »out of the box«.

I’d be thankful for some hints.

Thanks,
Tobias

p_urbanczyk · June 16, 2021, 9:05pm

@ajnyga @asmecher Hi, there!

I’m having trouble getting footnotes in the eLife Lens Article Viewer (with the latest OJS 3.3.0.6 version) to work.

I’ve already tried the following:

using a fork: GitHub - paflov/lensGalleyBits: OJS³ Plugin for JATS/BITS Galleys with enhanced LENS viewer, however it doesn’t work with the newest version of OJS (endless “loading/typesetting” loop),
using an alternative: GitHub - Vitaliy-1/JATSParserPlugin: OJS3 Plugin for parsing JATS XML and displaying it on article detail page, although I’m not sure what the use case for this one is — it appears to force the browser to download the XML file rather than parse it.
replacing the lens.js file with the one from the above-mentioned repo, and
manually modify the code in the mentioned file that is responsible for the and , however this appears to break the plugin’s appropriate behavior.

The native eLife Lens does support the footnotes.

Is it possible to re/add this functionality to the generic plugin in the future?

Vitaliy · June 18, 2021, 4:57pm

Hi @p_urbanczyk,

I can answer on this one

The plugin parses JATS XML on the back-end and adds full-text from JATS to a publication from a Publication tab of a correspondent submission: take a look a the full text tab (when plugin is activated) and additional option on a references tab when full-text is generated.

Vitaliy · June 18, 2021, 5:08pm

Here, I fixed the broken link to an image on the readme after branch renaming: GitHub - Vitaliy-1/JATSParserPlugin: OJS3 Plugin for parsing JATS XML and displaying it on article detail page

And live example on HTML and PDF the output: Емоційне вигорання медичних працівників: моделі, фактори ризику та протективні фактори | Психосоматична медицина та загальна практика. Take a look at the full-text under abstract on article landing page; this works differently from Lens Viewer, which renders XML on a galley page on the fly.

Unfortunately footnotes aren’t implemented but they are in the priority list.

SofieW · March 9, 2022, 12:20pm

Hi, I’m adding to this thread as we have journals on our national platform that are eagerly awaiting the possibility to publish XML files where the footnotes can be displayed. Do you have an approximate time when this feature might be available via your plugin (which otherwise looks great!)?

Many thanks in advance.
/Sofie.