New errors after upgrading to OJS 3.1.1.2

  1. I am not able to proceed further in the submission process. For example, not able to continue to Production phase from Copy editing phase. The loading symbol keeps on moving round and round.
    Furthermore, no other process moves on to the next step as well for every one. You cant even move onto the second step of the submission.

image

[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; Smarty has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/vendor/smarty/smarty/libs/Smarty.class.php on line 64
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADODB_Cache_File has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 263
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADOConnection has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 359
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 2921
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet_array has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 3939
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of PKPUsageEventPlugin::getEnabled() should be compatible with LazyLoadPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/lib/pkp/plugins/generic/usageEvent/PKPUsageEventPlugin.inc.php on line 386
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of DRIVERDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/driver/DRIVERDAO.inc.php on line 19
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of OpenAIREDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/openAIRE/OpenAIREDAO.inc.php on line 100
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of EditorDecisionForm::fetch($request) should be compatible with Form::fetch($request, $template = NULL, $display = false) in /home/u796555399/public_html/lib/pkp/classes/controllers/modals/editorDecision/form/EditorDecisionForm.inc.php on line 21
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of EditorDecisionWithEmailForm::initData($args, $request, $actionLabels) should be compatible with Form::initData() in /home/u796555399/public_html/lib/pkp/controllers/modals/editorDecision/form/EditorDecisionWithEmailForm.inc.php on line 18
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of PromoteForm::initData($args, $request) should be compatible with EditorDecisionWithEmailForm::initData($args, $request, $actionLabels) in /home/u796555399/public_html/lib/pkp/controllers/modals/editorDecision/form/PromoteForm.inc.php on line 21
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of PromoteForm::execute($args, $request) should be compatible with Form::execute() in /home/u796555399/public_html/lib/pkp/controllers/modals/editorDecision/form/PromoteForm.inc.php on line 21
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 369
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; Smarty has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/vendor/smarty/smarty/libs/Smarty.class.php on line 64
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; Smarty has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/vendor/smarty/smarty/libs/Smarty.class.php on line 64
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; Smarty has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/vendor/smarty/smarty/libs/Smarty.class.php on line 64
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADODB_Cache_File has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 263
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADODB_Cache_File has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 263
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADOConnection has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 359
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 2921
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet_array has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 3939
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADOConnection has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 359
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 2921
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet_array has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 3939
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADODB_Cache_File has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 263
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADOConnection has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 359
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 2921
[08-Jul-2018 21:03:25 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet_array has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 3939
[08-Jul-2018 21:03:25 UTC] PHP Warning:  Declaration of PKPUsageEventPlugin::getEnabled() should be compatible with LazyLoadPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/lib/pkp/plugins/generic/usageEvent/PKPUsageEventPlugin.inc.php on line 386
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of DRIVERDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/driver/DRIVERDAO.inc.php on line 19
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of PKPUsageEventPlugin::getEnabled() should be compatible with LazyLoadPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/lib/pkp/plugins/generic/usageEvent/PKPUsageEventPlugin.inc.php on line 386
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of PKPUsageEventPlugin::getEnabled() should be compatible with LazyLoadPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/lib/pkp/plugins/generic/usageEvent/PKPUsageEventPlugin.inc.php on line 386
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of DRIVERDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/driver/DRIVERDAO.inc.php on line 19
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of OpenAIREDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/openAIRE/OpenAIREDAO.inc.php on line 100
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of DRIVERDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/driver/DRIVERDAO.inc.php on line 19
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of OpenAIREDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/openAIRE/OpenAIREDAO.inc.php on line 100
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of OpenAIREDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/openAIRE/OpenAIREDAO.inc.php on line 100
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of FileListGridHandler::initialize($request) should be compatible with SubmissionFilesGridHandler::initialize($request, $args = NULL) in /home/u796555399/public_html/lib/pkp/controllers/grid/files/fileList/FileListGridHandler.inc.php on line 22
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CategoryGridHandler::doSpecificFetchGridActions($args, $request, &$templateMgr) should be compatible with GridHandler::doSpecificFetchGridActions($args, $request, $templateMgr) in /home/u796555399/public_html/lib/pkp/classes/controllers/grid/CategoryGridHandler.inc.php on line 493
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of LibraryFileGridCategoryRow::initialize($request) should be compatible with GridRow::initialize($request, $template = NULL) in /home/u796555399/public_html/lib/pkp/controllers/grid/files/LibraryFileGridCategoryRow.inc.php on line 59
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of LibraryFileGridHandler::initialize($request) should be compatible with CategoryGridHandler::initialize($request, $args = NULL) in /home/u796555399/public_html/lib/pkp/controllers/grid/files/LibraryFileGridHandler.inc.php on line 25
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of LibraryFileAdminGridDataProvider::loadCategoryData($request, &$fileType, $filter = NULL) should be compatible with CategoryGridDataProvider::loadCategoryData($request, $categoryDataElement, $filter = NULL) in /home/u796555399/public_html/lib/pkp/controllers/grid/settings/library/LibraryFileAdminGridDataProvider.inc.php on line 19
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of FileListGridHandler::initialize($request) should be compatible with SubmissionFilesGridHandler::initialize($request, $args = NULL) in /home/u796555399/public_html/lib/pkp/controllers/grid/files/fileList/FileListGridHandler.inc.php on line 22
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of SubmissionFileDAO::fromRow($row) should be compatible with PKPSubmissionFileDAO::fromRow($row, $fileImplementation) in /home/u796555399/public_html/classes/article/SubmissionFileDAO.inc.php on line 23
[08-Jul-2018 21:03:26 UTC] PHP Warning:  Declaration of SubmissionFileDAO::fromRow($row) should be compatible with PKPSubmissionFileDAO::fromRow($row, $fileImplementation) in /home/u796555399/public_html/classes/article/SubmissionFileDAO.inc.php on line 23
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; Smarty has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/vendor/smarty/smarty/libs/Smarty.class.php on line 64
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADODB_Cache_File has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 263
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADOConnection has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 359
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 2921
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet_array has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 3939
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of PKPUsageEventPlugin::getEnabled() should be compatible with LazyLoadPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/lib/pkp/plugins/generic/usageEvent/PKPUsageEventPlugin.inc.php on line 386
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of DRIVERDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/driver/DRIVERDAO.inc.php on line 19
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of OpenAIREDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/openAIRE/OpenAIREDAO.inc.php on line 100
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of EditorDecisionForm::fetch($request) should be compatible with Form::fetch($request, $template = NULL, $display = false) in /home/u796555399/public_html/lib/pkp/classes/controllers/modals/editorDecision/form/EditorDecisionForm.inc.php on line 21
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of EditorDecisionWithEmailForm::initData($args, $request, $actionLabels) should be compatible with Form::initData() in /home/u796555399/public_html/lib/pkp/controllers/modals/editorDecision/form/EditorDecisionWithEmailForm.inc.php on line 18
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of PromoteForm::initData($args, $request) should be compatible with EditorDecisionWithEmailForm::initData($args, $request, $actionLabels) in /home/u796555399/public_html/lib/pkp/controllers/modals/editorDecision/form/PromoteForm.inc.php on line 21
[08-Jul-2018 21:03:32 UTC] PHP Warning:  Declaration of PromoteForm::execute($args, $request) should be compatible with Form::execute() in /home/u796555399/public_html/lib/pkp/controllers/modals/editorDecision/form/PromoteForm.inc.php on line 21
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::isPost() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/validation/FormValidatorPost.inc.php on line 38
[08-Jul-2018 21:03:32 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 396
[08-Jul-2018 21:03:32 UTC] PHP Warning:  require_once(/home/u796555399/public_html/lib/pkp/plugins/metadata/nlm30/filter/Nlm30CitationSchemaCitationAdapter.inc.php): failed to open stream: No such file or directory in /home/u796555399/public_html/lib/pkp/includes/functions.inc.php on line 25
[08-Jul-2018 21:03:32 UTC] PHP Fatal error:  require_once(): Failed opening required '/home/u796555399/public_html/lib/pkp/plugins/metadata/nlm30/filter/Nlm30CitationSchemaCitationAdapter.inc.php' (include_path='.:/home/u796555399/public_html/classes:/home/u796555399/public_html/pages:/home/u796555399/public_html/lib/pkp:/home/u796555399/public_html/lib/pkp/classes:/home/u796555399/public_html/lib/pkp/pages:/home/u796555399/public_html/lib/pkp/lib/adodb:/home/u796555399/public_html/lib/pkp/lib/phputf8:/home/u796555399/public_html/lib/pkp/lib/pqp/classes:/home/u796555399/public_html/lib/pkp/lib/smarty:.:/opt/alt/php71/usr/share/pear') in /home/u796555399/public_html/lib/pkp/includes/functions.inc.php on line 25
  1. I get HTTP Error while uploading anything in galley (XML/PDF or anything). Ironically, the files still get uploaded (when you refresh the page, you can see the file already uploaded).

image

[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; Smarty has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/vendor/smarty/smarty/libs/Smarty.class.php on line 64
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADODB_Cache_File has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 263
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADOConnection has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 359
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 2921
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Methods with the same name as their class will not be constructors in a future version of PHP; ADORecordSet_array has a deprecated constructor in /home/u796555399/public_html/lib/pkp/lib/adodb/adodb.inc.php on line 3939
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of PKPUsageEventPlugin::getEnabled() should be compatible with LazyLoadPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/lib/pkp/plugins/generic/usageEvent/PKPUsageEventPlugin.inc.php on line 386
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of DRIVERDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/driver/DRIVERDAO.inc.php on line 19
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of OpenAIREDAO::setOAI(&$oai) should be compatible with PKPOAIDAO::setOAI($oai) in /home/u796555399/public_html/plugins/generic/openAIRE/OpenAIREDAO.inc.php on line 100
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of CustomBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockPlugin.inc.php on line 134
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/plugins/generic/customBlockManager/CustomBlockManagerPlugin.inc.php on line 65
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of PKPFileUploadWizardHandler::initialize($request, $args) should be compatible with PKPHandler::initialize($request) in /home/u796555399/public_html/lib/pkp/controllers/wizard/fileUpload/PKPFileUploadWizardHandler.inc.php on line 545
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of SubmissionFileDAO::fromRow($row) should be compatible with PKPSubmissionFileDAO::fromRow($row, $fileImplementation) in /home/u796555399/public_html/classes/article/SubmissionFileDAO.inc.php on line 23
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of PKPSubmissionFilesUploadBaseForm::fetch($request) should be compatible with Form::fetch($request, $template = NULL, $display = false) in /home/u796555399/public_html/lib/pkp/controllers/wizard/fileUpload/form/PKPSubmissionFilesUploadBaseForm.inc.php on line 20
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of SubmissionFilesUploadForm::validate($request) should be compatible with Form::validate($callHooks = true) in /home/u796555399/public_html/lib/pkp/controllers/wizard/fileUpload/form/SubmissionFilesUploadForm.inc.php on line 19
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of SubmissionFilesUploadForm::execute($request) should be compatible with Form::execute() in /home/u796555399/public_html/lib/pkp/controllers/wizard/fileUpload/form/SubmissionFilesUploadForm.inc.php on line 19
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Non-static method PKPRequest::getUserVar() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/Form.inc.php on line 388
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 592
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Non-static method PKPRequest::isPost() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/form/validation/FormValidatorPost.inc.php on line 38
[08-Jul-2018 21:01:37 UTC] PHP Deprecated:  Non-static method PKPRequest::_checkThis() should not be called statically in /home/u796555399/public_html/lib/pkp/classes/core/PKPRequest.inc.php on line 396
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/lib/pkp/classes/file/FileManager.inc.php on line 97
[08-Jul-2018 21:01:37 UTC] PHP Notice:  Only variables should be passed by reference in /home/u796555399/public_html/lib/pkp/classes/core/PKPString.inc.php on line 447
[08-Jul-2018 21:01:37 UTC] PHP Warning:  Declaration of SubmissionFileLog::logEvent($request, &$submissionFile, $eventType, $messageKey, $params = Array) should be compatible with SubmissionLog::logEvent($request, $submission, $eventType, $messageKey, $params = Array) in /home/u796555399/public_html/lib/pkp/classes/log/SubmissionFileLog.inc.php on line 18
[08-Jul-2018 21:01:37 UTC] PHP Warning:  require_once(/home/u796555399/public_html/lib/pkp/plugins/metadata/nlm30/filter/Nlm30CitationSchemaCitationAdapter.inc.php): failed to open stream: No such file or directory in /home/u796555399/public_html/lib/pkp/includes/functions.inc.php on line 25
[08-Jul-2018 21:01:37 UTC] PHP Fatal error:  require_once(): Failed opening required '/home/u796555399/public_html/lib/pkp/plugins/metadata/nlm30/filter/Nlm30CitationSchemaCitationAdapter.inc.php' (include_path='.:/home/u796555399/public_html/classes:/home/u796555399/public_html/pages:/home/u796555399/public_html/lib/pkp:/home/u796555399/public_html/lib/pkp/classes:/home/u796555399/public_html/lib/pkp/pages:/home/u796555399/public_html/lib/pkp/lib/adodb:/home/u796555399/public_html/lib/pkp/lib/phputf8:/home/u796555399/public_html/lib/pkp/lib/pqp/classes:/home/u796555399/public_html/lib/pkp/lib/smarty:.:/opt/alt/php71/usr/share/pear') in /home/u796555399/public_html/lib/pkp/includes/functions.inc.php on line 25

Please help. Its kind of urgent. Thanks a ton.

Hi @varshilmehta,

Are you sure the upgrade script completed successfully? It looks like at least one of the upgrade steps didn’t get executed.

Regards,
Alec Smecher
Public Knowledge Project Team

Yup, it was upgraded successfully. Should I re-run the upgradation?

Hi @varshilmehta,

The SQL statements that should’ve run are:

DELETE FROM fs USING filter_settings fs INNER JOIN filters f ON (fs.filter_id = f.filter_id) INNER JOIN filter_groups fg ON (f.filter_group_id = fg.filter_group_id AND fg.symbolic IN ('citation=>nlm30', 'isbn=>nlm30-element-citation', 'nlm30-article-xml=>nlm23-article-xml', 'nlm30-element-citation=>isbn', 'nlm30-element-citation=>nlm30-element-citation', 'nlm30-element-citation=>nlm30-xml', 'nlm30-element-citation=>plaintext', 'nlm30=>citation', 'plaintext=>nlm30-element-citation', 'submission=>nlm23-article-xml', 'submission=>nlm30-article-xml', 'submission=>reference-list'));
DELETE FROM f USING filters f INNER JOIN filter_groups fg ON (f.filter_group_id = fg.filter_group_id AND fg.symbolic IN ('citation=>nlm30', 'isbn=>nlm30-element-citation', 'nlm30-article-xml=>nlm23-article-xml', 'nlm30-element-citation=>isbn', 'nlm30-element-citation=>nlm30-element-citation', 'nlm30-element-citation=>nlm30-xml', 'nlm30-element-citation=>plaintext', 'nlm30=>citation', 'plaintext=>nlm30-element-citation', 'submission=>nlm23-article-xml', 'submission=>nlm30-article-xml', 'submission=>reference-list'));
DELETE FROM filter_groups WHERE symbolic IN ('citation=>nlm30', 'isbn=>nlm30-element-citation', 'nlm30-article-xml=>nlm23-article-xml', 'nlm30-element-citation=>isbn', 'nlm30-element-citation=>nlm30-element-citation', 'nlm30-element-citation=>nlm30-xml', 'nlm30-element-citation=>plaintext', 'nlm30=>citation', 'plaintext=>nlm30-element-citation', 'submission=>nlm23-article-xml', 'submission=>nlm30-article-xml', 'submission=>reference-list');

(These are coded in dbscripts/xml/upgrade/3.1.1_update.xml.)

Make sure you back up your database before you run these.

Regards,
Alec Smecher
Public Knowledge Project Team

1 Like

How do I run these specifically?

Hi @varshilmehta,

That depends on your server. Usually a CPanel-based server will have a copy of phpMyAdmin you can use to run SQL statements. Personally, I usually use the mysql command-line client.

Regards,
Alec Smecher
Public Knowledge Project Team

Awesome man. Thanks a ton. It did the magic!

Dear @asmecher
We found like same this problem, recently updated the database and ojs version 3.1.1-4

[09-Oct-2018 05:11:30 UTC] PHP Warning: require_once(/home/eleyon/public_html/journals/lib/pkp/plugins/metadata/nlm30/filter/Nlm30CitationSchemaCitationAdapter.inc.php): failed to open stream: No such file or directory in /home/eleyon/public_html/journals/lib/pkp/includes/functions.inc.php on line 25
[09-Oct-2018 05:11:30 UTC] PHP Fatal error: require_once(): Failed opening required ‘/home/eleyon/public_html/journals/lib/pkp/plugins/metadata/nlm30/filter/Nlm30CitationSchemaCitationAdapter.inc.php’ (include_path=’.:/home/eleyon/public_html/journals/classes:/home/eleyon/public_html/journals/pages:/home/eleyon/public_html/journals/lib/pkp:/home/eleyon/public_html/journals/lib/pkp/classes:/home/eleyon/public_html/journals/lib/pkp/pages:/home/eleyon/public_html/journals/lib/pkp/lib/adodb:/home/eleyon/public_html/journals/lib/pkp/lib/phputf8:/home/eleyon/public_html/journals/lib/pkp/lib/pqp/classes:/home/eleyon/public_html/journals/lib/pkp/lib/smarty:.:/opt/cpanel/ea-php70/root/usr/share/pear’) in /home/eleyon/public_html/journals/lib/pkp/includes/functions.inc.php on line 25