I don’t know if this is implemented in 3.x branch, but in 2.4.x there is no way to register a DOI for the journal… So I usually create and submit journal’s root DOIs by hand, that it’s not difficult, but kind of annoying doing a work that could be done by a machine.
Here you have some info about “Journal level DOIs”:
Yes, that could be done. This was/is not our priority, because nobody ever asked for it and it is only done once for a journal so that it is not so much manual work for the users. Any contribution is of course very welcome! Unfortunately, the code amount for that feature – to function in the same way as the DOIs are assigned and registered on the other levels and for different agencies – is not small, so that I am not sure if it is worth, but…