Hyperlinks in references upon upgrade to OJS 3

I noticed that upon upgrading from OJS 2 to 3, urls in references were transformed to hyperlinks (they were raw urls in OJS 2).
As a result, some urls are not properly hyperlinked, e.g.:


and others don’t break and occupy the side container, e.g.:


While hyperlinking have advantages, broken links or those breaking the layout would better be avoided. Is there a way to deal with these two issues during the upgrade process or after?

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