Problem upgrading database 2.3.7.0 to 3.0

Did you restart from backup when the OJS 3.0 upgrade failed?

I don’t really understand what you mean, restart what? I don’t restarted nothing, the upgrade seems to fail and of course when you try to access from browser appears an 404 not found.

If you do upgrade and it fails, following upgrades will fail too as the upgrade script edits database and when it tries to do the edits again it causes conflicts.

You should restore from backup and try again. If it fails still, there is something else wrong.

yep, every time I tested the upgrade I load the database dump again, that’s not the problem.

Hi @pir,

The fact that the upgrade process ends without confirming an upgrade is interesting. Can you check your PHP error log to see whether anything appears there? It’s possible that the execution is getting killed e.g. by a timeout limit. If that’s the case, it should be displayed or logged, depending on your PHP configuration.

What do you get if you run the following?

php tools/upgrade.php check

Regards,
Alec Smecher
Public Knowledge Project Team

1 Like

[root@raco-dev ojs]# php tools/upgrade.php check
Code version: 3.0.0.0
Database version: 2.4.8.1
Latest version: 2.4.8.1
Database version is older than code version
Run “tools/upgrade.php upgrade” to update

let me check the php error log…

What I can see in php error log is that during step [data: dbscripts/xml/upgrade/3.0.0_update.xml] it prints this:

[12-Dec-2016 10:38:17 UTC] PHP Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:38:17 UTC] PHP Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:38:20 UTC] PHP Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:38:20 UTC] PHP Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:38:32 UTC] PHP Notice: unserialize(): Error at offset 5563 of 7016 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:39:15 UTC] PHP Notice: unserialize(): Error at offset 146 of 278 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:39:15 UTC] PHP Notice: unserialize(): Error at offset 146 of 278 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:39:47 UTC] PHP Notice: unserialize(): Error at offset 42 of 186 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:39:47 UTC] PHP Notice: unserialize(): Error at offset 42 of 186 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:09 UTC] PHP Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:09 UTC] PHP Notice: unserialize(): Error at offset 4620 of 4660 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:09 UTC] PHP Notice: unserialize(): Error at offset 89 of 4678 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:36 UTC] PHP Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:36 UTC] PHP Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:51 UTC] PHP Notice: unserialize(): Error at offset 194 of 312 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:40:52 UTC] PHP Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:04 UTC] PHP Notice: unserialize(): Error at offset 440 of 458 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:04 UTC] PHP Notice: unserialize(): Error at offset 1153 of 1215 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:04 UTC] PHP Notice: unserialize(): Error at offset 442 of 460 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:09 UTC] PHP Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:09 UTC] PHP Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:24 UTC] PHP Notice: unserialize(): Error at offset 803 of 825 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:36 UTC] PHP Notice: unserialize(): Error at offset 40 of 178 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:41:36 UTC] PHP Notice: unserialize(): Error at offset 40 of 178 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:42:03 UTC] PHP Notice: unserialize(): Error at offset 90 of 404 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:42:17 UTC] PHP Notice: unserialize(): Error at offset 80 of 160 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:42:39 UTC] PHP Notice: unserialize(): Error at offset 1837 of 1930 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:42:52 UTC] PHP Notice: unserialize(): Error at offset 1203 of 1261 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:42:53 UTC] PHP Notice: unserialize(): Error at offset 4306 of 4464 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:43:38 UTC] PHP Notice: unserialize(): Error at offset 820 of 846 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:43:56 UTC] PHP Notice: unserialize(): Error at offset 1346 of 1499 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:43:56 UTC] PHP Notice: unserialize(): Error at offset 2436 of 11221 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[12-Dec-2016 10:44:01 UTC] PHP Notice: unserialize(): Error at offset 818 of 860 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Hi @pir,

Those serialization problems suggest that your character set configuration has changed – double-check that your new and old databases have the same encodings, and that your config.inc.php character set options match your old 2.x installation.

Regards,
Alec Smecher
Public Knowledge Project Team

will look that, but let me explain more things. after the serialize problems caused by the [data: dbscripts/xml/upgrade/3.0.0_update.xml] step, it continues with the following [code: Installer Installer::clearDataCache], [code: Installer Installer::migrateUserRoles] and [code: Installer Installer::installDefaultGenres], I don’t know which one cause the following output but this is what php error log shows:

[13-Dec-2016 05:16:13 UTC] PHP Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:16:19 UTC] PHP Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:17:18 UTC] PHP Notice: unserialize(): Error at offset 5563 of 7016 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:20:03 UTC] PHP Notice: unserialize(): Error at offset 146 of 278 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:21:50 UTC] PHP Notice: unserialize(): Error at offset 42 of 186 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:21:50 UTC] PHP Notice: unserialize(): Error at offset 42 of 186 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:22:39 UTC] PHP Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:22:39 UTC] PHP Notice: unserialize(): Error at offset 4620 of 4660 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:52:33 UTC] PHP Notice: unserialize(): Error at offset 1647 of 6815 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 05:52:33 UTC] PHP Notice: unserialize(): Error at offset 123 of 273 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:04:21 UTC] PHP Notice: unserialize(): Error at offset 38 of 403 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:04:21 UTC] PHP Notice: unserialize(): Error at offset 42 of 411 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 47 of 185 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 47 of 185 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 165 of 914 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 167 of 918 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 2173 of 13889 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 57 of 15377 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:05:44 UTC] PHP Notice: unserialize(): Error at offset 56 of 16242 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:07:21 UTC] PHP Notice: unserialize(): Error at offset 56 of 1299 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:06 UTC] PHP Notice: unserialize(): Error at offset 225 of 925 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:06 UTC] PHP Notice: unserialize(): Error at offset 99 of 148 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:06 UTC] PHP Notice: unserialize(): Error at offset 91 of 1363 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:06 UTC] PHP Notice: unserialize(): Error at offset 89 of 1295 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:06 UTC] PHP Notice: unserialize(): Error at offset 1306 of 1344 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:12 UTC] PHP Notice: unserialize(): Error at offset 53 of 4141 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:08:44 UTC] PHP Notice: unserialize(): Error at offset 254 of 266 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:09:52 UTC] PHP Notice: unserialize(): Error at offset 1609 of 1659 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:10:28 UTC] PHP Notice: unserialize(): Error at offset 35 of 181 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:12:07 UTC] PHP Notice: unserialize(): Error at offset 2735 of 2807 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:12:25 UTC] PHP Notice: unserialize(): Error at offset 1198 of 1244 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:13:18 UTC] PHP Notice: unserialize(): Error at offset 82 of 643 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:13:18 UTC] PHP Notice: unserialize(): Error at offset 191 of 245 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:13:18 UTC] PHP Notice: unserialize(): Error at offset 900 of 1097 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:13:18 UTC] PHP Notice: unserialize(): Error at offset 668 of 692 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:13:18 UTC] PHP Notice: unserialize(): Error at offset 927 of 1124 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:13:52 UTC] PHP Notice: unserialize(): Error at offset 2081 of 2095 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:14:05 UTC] PHP Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:15:31 UTC] PHP Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[13-Dec-2016 06:20:05 UTC] PHP Fatal error: Allowed memory size of 134217728 bytes exhausted (tried to allocate 32 bytes) in /dades/ojs/lib/pkp/classes/core/Registry.inc.php on line 38

wow, seems a memory problem???

Hi @pir,

Yes, this would explain the upgrade problem – you’re hitting a memory limit that’s set in your php.ini configuration. You’ll need to extend this limit, at least for the upgrade. Look up the PHP memory_limit setting.

Regards,
Alec Smecher
Public Knowledge Project Team

After rise the memory_limit I’m getting this:

[pre-install]
[load: upgrade.xml]
[version: 3.0.0.0]

[code: Installer Installer::syncSeriesAssocType]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics2.xml]
[data: dbscripts/xml/upgrade/3.0.0_preupdate.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptTimedViews.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_adaptReferrals.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptBooksForReview.xml]
[data: dbscripts/xml/upgrade/remove_timed_views_bots.xml (skipped)]

[code: Installer Installer::migrateCounterPluginUsageStatistics (skipped)]

[code: Installer Installer::migrateTimedViewsUsageStatistics (skipped)]

[code: Installer Installer::migrateDefaultUsageStatistics (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration2.xml]
[data: dbscripts/xml/upgrade/2.4.0_postCounterMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postTimedViewsMigration.xml (skipped)]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/gifts.xml]
[schema: lib/pkp/xml/schema/mutex.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: dbscripts/xml/ojs_schema.xml]
[data: dbscripts/xml/indexes.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type_metrics.xml]
[data: dbscripts/xml/upgrade/3.0.0_settings.xml]

[code: Installer Installer::migrateArticleMetadata]

Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 5563 of 7016 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 39 of 177 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1748 of 1813 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 996 of 1038 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2451 of 2517 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 813 of 877 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2101 of 2176 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1198 of 1244 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 82 of 643 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 191 of 245 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 900 of 1097 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 668 of 692 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 927 of 1124 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2081 of 2095 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[data: dbscripts/xml/upgrade/3.0.0_update.xml]

[code: Installer Installer::clearDataCache]

[code: Installer Installer::migrateUserRoles]

Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 5563 of 7016 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 146 of 278 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2081 of 2095 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

[code: Installer Installer::installDefaultGenres]

[code: Installer Installer::fixReviewForms]

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 56 of 115 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

Notice: unserialize(): Error at offset 213 of 680 bytes in /dades/ojs/classes/install/Upgrade.inc.php on line 705

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 707

[code: Installer Installer::htmlifyEmailTemplates]

Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 89 of 4678 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 194 of 312 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 194 of 312 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 440 of 458 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1153 of 1215 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 442 of 460 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 440 of 458 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1153 of 1215 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 442 of 460 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 803 of 825 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 803 of 825 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 40 of 178 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 40 of 178 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 40 of 178 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 40 of 178 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 90 of 404 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 90 of 404 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 80 of 160 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 80 of 160 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1837 of 1930 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1837 of 1930 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1203 of 1261 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1203 of 1261 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 4306 of 4464 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 4306 of 4464 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 820 of 846 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 820 of 846 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1346 of 1499 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2436 of 11221 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1346 of 1499 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2436 of 11221 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 162 of 221 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 66 of 226 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 2081 of 2095 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347
[note: docs/release-notes/README-BEACON]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]
[data: dbscripts/xml/upgrade/3.0.0_scheduledTasks.xml]

[code: Installer Installer::localizeCustomBlockSettings]

Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 5563 of 7016 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

[code: Installer Installer::convertEditorDecisionNotes]

[code: Installer Installer::convertQueries]

[code: Installer Installer::migrateFiles]

Notice: unserialize(): Error at offset 245 of 256 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 70 of 484 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 5563 of 7016 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 146 of 278 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 42 of 186 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 42 of 186 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 4620 of 4660 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 89 of 4678 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 59 of 204 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 194 of 312 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 73 of 115 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 440 of 458 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1153 of 1215 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 442 of 460 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 36 of 174 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1802 of 1883 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 696 of 714 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

[code: Installer Installer::convertSupplementaryFiles]

Warning: copy(/dades/ojs/files/journals/199//articles/38018/attachment/38018-1-40462-1-13-20060623.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: copy(/dades/ojs/files/journals/342//articles/70663/attachment/70663-1-90678-1-13-20071025.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/318//articles/90422/attachment/90422-1-145375-1-13-20080827.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/305//articles/94692/attachment/94692-1-151924-1-13-20080929.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: copy(/dades/ojs/files/journals/296//articles/72913/attachment/72913-1-96922-1-13-20071215.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/353//articles/112519/attachment/112519-1-189897-1-13-20090919.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Notice: unserialize(): Error at offset 225 of 925 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 99 of 148 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 91 of 1363 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 89 of 1295 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1306 of 1344 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Warning: copy(/dades/ojs/files/journals/361//articles/197125/attachment/197125-1-269615-1-13-20100928.xls): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/121//articles/220876/attachment/220876-1-301794-1-13-20110131.doc): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/478//articles/225772/attachment/225772-1-307268-1-13-20110214.doc): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Notice: unserialize(): Error at offset 927 of 1124 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Warning: copy(/dades/ojs/files/journals/159//articles/267024/attachment/267024-1-362581-1-13-20130717.docx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Notice: unserialize(): Error at offset 50 of 1092 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 51 of 1108 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: copy(/dades/ojs/files/journals/135//articles/263706/attachment/263706-1-356771-1-13-20130411.xls): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263707/attachment/263707-1-356773-1-13-20130411.docx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263707/attachment/263707-1-356774-1-13-20130411.docx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263707/attachment/263707-1-356775-1-13-20130411.docx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263710/attachment/263710-1-356779-1-13-20130411.docx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263723/attachment/263723-1-356799-1-13-20130411.docx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263725/attachment/263725-1-356802-1-13-20130411.doc): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/135//articles/263729/attachment/263729-1-356807-1-13-20130411.xlsx): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Notice: unserialize(): Error at offset 1654 of 4747 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1633 of 5956 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 1647 of 6815 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 123 of 273 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Notice: unserialize(): Error at offset 131 of 303 bytes in /dades/ojs/lib/pkp/classes/db/DAO.inc.php on line 347

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 380

There are no readable files in this directory tree. Are safe mode or open_basedir active?

Stack Trace:

File: /dades/ojs/lib/pkp/classes/file/FileManager.inc.php line 157
Function: FileManager->mkdirtree("")

File: /dades/ojs/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php line 383
Function: FileManager->copyFile(Null, Null)

File: /dades/ojs/classes/install/Upgrade.inc.php line 1248
Function: PKPSubmissionFileDAO->updateObject(Object(SubmissionFile))

File: (unknown) line (unknown)
Function: Upgrade->convertSupplementaryFiles(Object(Upgrade), Array(1))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 415
Function: call_user_func(Array(2), Object(Upgrade), Array(1))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 265
Function: Installer->executeAction(Array(3))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 186
Function: Installer->executeInstaller()

File: /dades/ojs/lib/pkp/classes/cliTool/UpgradeTool.inc.php line 87
Function: Installer->execute()

File: /dades/ojs/lib/pkp/classes/cliTool/UpgradeTool.inc.php line 63
Function: UpgradeTool->upgrade()

File: /dades/ojs/tools/upgrade.php line 34
Function: UpgradeTool->execute()

Hi @pir,

There are several things happening there – first, let’s deal with the offset notices. Have you inadvertently changed your character set configuration in config.inc.php in your new OJS as opposed to the old one?

Regards,
Alec Smecher
Public Knowledge Project Team

I have changed the character set in config.inc.php, no more offset errors, now I am getting this:

[pre-install]
[load: upgrade.xml]
[version: 3.0.0.0]

[code: Installer Installer::syncSeriesAssocType]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics2.xml]
[data: dbscripts/xml/upgrade/3.0.0_preupdate.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptTimedViews.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_adaptReferrals.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptBooksForReview.xml]
[data: dbscripts/xml/upgrade/remove_timed_views_bots.xml (skipped)]

[code: Installer Installer::migrateCounterPluginUsageStatistics (skipped)]

[code: Installer Installer::migrateTimedViewsUsageStatistics (skipped)]

[code: Installer Installer::migrateDefaultUsageStatistics (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration2.xml]
[data: dbscripts/xml/upgrade/2.4.0_postCounterMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postTimedViewsMigration.xml (skipped)]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/gifts.xml]
[schema: lib/pkp/xml/schema/mutex.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: dbscripts/xml/ojs_schema.xml]
[data: dbscripts/xml/indexes.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type_metrics.xml]
[data: dbscripts/xml/upgrade/3.0.0_settings.xml]

[code: Installer Installer::migrateArticleMetadata]
[data: dbscripts/xml/upgrade/3.0.0_update.xml]

[code: Installer Installer::clearDataCache]

[code: Installer Installer::migrateUserRoles]

[code: Installer Installer::installDefaultGenres]

[code: Installer Installer::fixReviewForms]

[code: Installer Installer::htmlifyEmailTemplates]
[note: docs/release-notes/README-BEACON]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]
[data: dbscripts/xml/upgrade/3.0.0_scheduledTasks.xml]

[code: Installer Installer::localizeCustomBlockSettings]

[code: Installer Installer::convertEditorDecisionNotes]

[code: Installer Installer::convertQueries]

[code: Installer Installer::migrateFiles]

[code: Installer Installer::convertSupplementaryFiles]

Warning: copy(/dades/ojs/files/journals/199//articles/38018/attachment/38018-1-40462-1-13-20060623.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: copy(/dades/ojs/files/journals/342//articles/70663/attachment/70663-1-90678-1-13-20071025.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/318//articles/90422/attachment/90422-1-145375-1-13-20080827.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: copy(/dades/ojs/files/journals/305//articles/94692/attachment/94692-1-151924-1-13-20080929.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: copy(/dades/ojs/files/journals/296//articles/72913/attachment/72913-1-96922-1-13-20071215.pdf): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

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Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

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Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 380

There are no readable files in this directory tree. Are safe mode or open_basedir active?

Stack Trace:

File: /dades/ojs/lib/pkp/classes/file/FileManager.inc.php line 157
Function: FileManager->mkdirtree("")

File: /dades/ojs/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php line 383
Function: FileManager->copyFile(Null, Null)

File: /dades/ojs/classes/install/Upgrade.inc.php line 1248
Function: PKPSubmissionFileDAO->updateObject(Object(SubmissionFile))

File: (unknown) line (unknown)
Function: Upgrade->convertSupplementaryFiles(Object(Upgrade), Array(1))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 415
Function: call_user_func(Array(2), Object(Upgrade), Array(1))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 265
Function: Installer->executeAction(Array(3))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 186
Function: Installer->executeInstaller()

File: /dades/ojs/lib/pkp/classes/cliTool/UpgradeTool.inc.php line 87
Function: Installer->execute()

File: /dades/ojs/lib/pkp/classes/cliTool/UpgradeTool.inc.php line 63
Function: UpgradeTool->upgrade()

File: /dades/ojs/tools/upgrade.php line 34
Function: UpgradeTool->execute()

Do you see the files it is complaining about not having access to? For example:

If so, follow up on the message:

It is probable that PHP is restricted or your webserver user is lacking file permissions.

If not, look into why OJS is looking for a file here but not finding one.

Finally, be sure to restore both the database and the files_dir to a clean 2.4.8 state between any failed upgrade attempts.

Hi,

I have upgrade from 2.4.6. to 3.0.1. I get one or more of “unserialize(): Error at offset…” for each page which is loaded in my browser. My old config file char set was as follows:

client_charset = utf-8
connection_charset = utf-8
database_charset = utf-8
charset_normalization = Off

These match with my new config file. I tied matching them before doing the actual upgrade. What else I can check?

Actually I think it is irrelevant to upgrade itself. because I get the error even on install and installUpgrade pages.

Thanks
Ghazal

Hi @salehig,

That’s not really related to this thread – could you post it as a new topic?

Regards,
Alec Smecher
Public Knowledge Project Team

Hi @ctgraham:

I cannot see the attachment files ojs is looking for, I think that in the database might be some reference to this but I didn’t copied the files dir from my 2.3.7.0 installation so that why he is trowing that error.

The files folder is mandatory to do the database upgrade? would be great it isn’t because mine is quite big. Also I don’t restore this folder after the upgrade fails.

Now I’m going to look about the php user permissions.

The files_dir contents would not change during the database upgrade from 2.3.7 to 2.4.x, but they will be required and will change for the upgrade from 2.4.x to 3.x.
https://github.com/pkp/ojs/blob/master/docs/UPGRADE#L4-L6

For a failed 3.x upgrade, you will need to revert back to a copy of the database and a copy of the files_dir and then re-run the upgrade.

Hi @ctgraham,
After trying the upgrade with a copy of the real files folder I obtained this:

[pre-install]
[load: upgrade.xml]
[version: 3.0.0.0]

[code: Installer Installer::syncSeriesAssocType]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics2.xml]
[data: dbscripts/xml/upgrade/3.0.0_preupdate.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptTimedViews.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_adaptReferrals.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptBooksForReview.xml]
[data: dbscripts/xml/upgrade/remove_timed_views_bots.xml (skipped)]

[code: Installer Installer::migrateCounterPluginUsageStatistics (skipped)]

[code: Installer Installer::migrateTimedViewsUsageStatistics (skipped)]

[code: Installer Installer::migrateDefaultUsageStatistics (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration2.xml]
[data: dbscripts/xml/upgrade/2.4.0_postCounterMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postTimedViewsMigration.xml (skipped)]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/gifts.xml]
[schema: lib/pkp/xml/schema/mutex.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: dbscripts/xml/ojs_schema.xml]
[data: dbscripts/xml/indexes.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type_metrics.xml]
[data: dbscripts/xml/upgrade/3.0.0_settings.xml]

[code: Installer Installer::migrateArticleMetadata]
[data: dbscripts/xml/upgrade/3.0.0_update.xml]

[code: Installer Installer::clearDataCache]

[code: Installer Installer::migrateUserRoles]

[code: Installer Installer::installDefaultGenres]

[code: Installer Installer::fixReviewForms]

[code: Installer Installer::htmlifyEmailTemplates]
[note: docs/release-notes/README-BEACON]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]
[data: dbscripts/xml/upgrade/3.0.0_scheduledTasks.xml]

[code: Installer Installer::localizeCustomBlockSettings]

[code: Installer Installer::convertEditorDecisionNotes]

[code: Installer Installer::convertQueries]

[code: Installer Installer::migrateFiles]

[code: Installer Installer::convertSupplementaryFiles]

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: copy(/projectes/raco-dev/pablocopia/journals/361//articles/197125/attachment/197125-1-269615-1-13-20100928.xls): failed to open stream: El fitxer o directori no existeix in /dades/ojs/lib/pkp/classes/file/FileManager.inc.php on line 159

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/SubmissionFileDAODelegate.inc.php on line 132

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1243

Warning: Invalid argument supplied for foreach() in /dades/ojs/classes/install/Upgrade.inc.php on line 1253

Warning: assert(): Assertion failed in /dades/ojs/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 380

There are no readable files in this directory tree. Are safe mode or open_basedir active?

Stack Trace:

File: /dades/ojs/lib/pkp/classes/file/FileManager.inc.php line 157
Function: FileManager->mkdirtree("")

File: /dades/ojs/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php line 383
Function: FileManager->copyFile(Null, Null)

File: /dades/ojs/classes/install/Upgrade.inc.php line 1248
Function: PKPSubmissionFileDAO->updateObject(Object(SubmissionFile))

File: (unknown) line (unknown)
Function: Upgrade->convertSupplementaryFiles(Object(Upgrade), Array(1))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 415
Function: call_user_func(Array(2), Object(Upgrade), Array(1))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 265
Function: Installer->executeAction(Array(3))

File: /dades/ojs/lib/pkp/classes/install/Installer.inc.php line 186
Function: Installer->executeInstaller()

File: /dades/ojs/lib/pkp/classes/cliTool/UpgradeTool.inc.php line 87
Function: Installer->execute()

File: /dades/ojs/lib/pkp/classes/cliTool/UpgradeTool.inc.php line 63
Function: UpgradeTool->upgrade()

File: /dades/ojs/tools/upgrade.php line 34
Function: UpgradeTool->execute()

If I try to open ojs I get this html:

404 Not FoundStack Trace:
File: /dades/ojs/lib/pkp/classes/core/PKPPageRouter.inc.php line 203

Function: Dispatcher->handle404()

File: /dades/ojs/lib/pkp/classes/core/Dispatcher.inc.php line 134

Function: PKPPageRouter->route(Object(Request))

File: /dades/ojs/lib/pkp/classes/core/PKPApplication.inc.php line 227

Function: Dispatcher->dispatch(Object(Request))

File: /dades/ojs/index.php line 68

Function: PKPApplication->execute()

Hi @pir,

I believe that’s the same issue that’s being discussed here:

Regards,
Alec Smecher
Public Knowledge Project Team