OMP cover image upload produces Assertion failed error

Hembo_Pagi · October 7, 2015, 10:04am

Hello, I have managed to install and set up OMP on Nginx server. All seemed to be working, but when i was trying to upload the cover image to my submission i found this from the error log:


2015/10/07 05:50:18 [error] 15066#0: *71 FastCGI sent in stderr: "PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1" while reading response header from upstream, client: 152.78.36.20, server: omp, request: "POST /index.php/eaa/$$$call$$$/tab/catalog-entry/catalog-entry-tab/save-form HTTP/1.1", upstream: "fastcgi://unix:/var/run/php5-fpm.sock:", host: "omp", referrer: "http://omp/index.php/eaa/manageCatalog"
2015/10/07 05:50:19 [error] 15066#0: *71 FastCGI sent in stderr: "PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1" while reading response header from upstream, client: 152.78.36.20, server: omp, request: "GET /index.php/eaa/$$$call$$$/tab/catalog-entry/catalog-entry-tab/catalog-metadata?tab=catalog&submissionId=2&stageId=5&tabPos=1&_=1444211418984 HTTP/1.1", upstream: "fastcgi://unix:/var/run/php5-fpm.sock:", host: "omp", referrer: "http://omp/index.php/eaa/manageCatalog"
2015/10/07 05:50:19 [error] 15066#0: *71 FastCGI sent in stderr: "PHP message: omp has produced an error
  Message: WARNING: assert(): Assertion failed
  In file: /var/www/omp/htdocs/classes/codelist/ONIXCodelistItemDAO.inc.php
  At line: 91
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.11
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: NOTICE: Undefined index: DA (/var/www/omp/htdocs/classes/publicationFormat/PublicationFormat.inc.php:82)" while reading response header from upstream, client: 152.78.36.20, server: omp, request: "GET /index.php/eaa/$$$call$$$/grid/catalog-entry/publication-format-grid/fetch-grid?submissionId=2&inCatalogEntryModal=1&_=1444211419480 HTTP/1.1", upstream: "fastcgi://unix:/var/run/php5-fpm.sock:", host: "omp", referrer: "http://omp/index.php/eaa/manageCatalog"

ctgraham · October 7, 2015, 12:20pm

This looks like OMP is unable to use XSLT. The call is here:

github.com

pkp/omp/blob/omp-stable-1_1_1/classes/codelist/ONIXCodelistItemDAO.inc.php#L90-L91


			$filteredXml = $xslTransformer->transform($filename, XSL_TRANSFORMER_DOCTYPE_FILE, $xslFile, XSL_TRANSFORMER_DOCTYPE_FILE, XSL_TRANSFORMER_DOCTYPE_STRING);
			if (!$filteredXml) {assert(false);}

A first guess would be your XSLT configuration. OMP tries to use the xslt_command specified in your config.inc.php, or tries to use PHP itself if you have the modules DOM and XSL enabled.

github.com

pkp/pkp-lib/blob/omp-stable-1_1_1/classes/xslt/XSLTransformer.inc.php#L49-L70


	function XSLTransformer() {
		$this->externalCommand = Config::getVar('cli', 'xslt_command');
		$this->externalParameterSnippet = Config::getVar('cli', 'xslt_parameter_option');

		// Determine the appropriate XSLT processor for the system
		if ($this->externalCommand) {
			// check the external command to check for %xsl and %xml parameter substitution
			if ( strpos($this->externalCommand, '%xsl') === false ) return false;
			if ( strpos($this->externalCommand, '%xml') === false ) return false;
			$this->processor = 'External';

		} elseif (extension_loaded('xsl') && extension_loaded('dom')) {
			// XSL/DOM modules present
			$this->processor = 'PHP';

		} else {
			// no XSLT support
			return false;
		}

This file has been truncated. show original

Do you know what configuration you’re using? You can check the setting in config.inc.php and the PHP modules in phpinfo().

Hembo_Pagi · October 8, 2015, 10:27am

Hello

I have now installed the missing xsl library for php (http://omp.archiving.zone/phpinfo.php), and error message disappeared. But still, the issue remains the same … when uploading cover photo and clicking save-button, uploaded file disappear from the list.
In OMP config i have not set anything for xslt_command and xslt_parameter_option

Hembo_Pagi · October 9, 2015, 12:56pm

Probably related issue to my xsl/schema problem. When trying to export Native XML blank page is displayed and the following error logged:

2015/10/09 08:52:18 [error] 27028#0: *9360 FastCGI sent in stderr: "PHP message: omp has produced an error
  Message: WARNING: DOMDocument::schemaValidate(): Element '{http://ns.editeur.org/onix/3.0/reference}SenderIDType': [facet 'enumeration'] The value '' is not an element of the set {'01', '02', '03', '04', '05', '06', '07', '10', '13', '15', '16', '17', '18', '19', '20', '21', '22', '23', '24'}.
  In file: /var/www/omp.archiving.zone/htdocs/lib/pkp/classes/xslt/XMLTypeDescription.inc.php
  At line: 126
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.13
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: DOMDocument::schemaValidate(): Element '{http://ns.editeur.org/onix/3.0/reference}SenderIDType': '' is not a valid value of the atomic type '{http://ns.editeur.org/onix/3.0/reference}List44'.
  In file: /var/www/omp.archiving.zone/htdocs/lib/pkp/classes/xslt/XMLTypeDescription.inc.php
  At line: 126
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.13
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: DOMDocument::schemaValidate(): Element '{http://ns.editeur.org/onix/3.0/reference}IDValue': [facet 'minLength'] The value has a length of '0'; this underruns the allowed minimum length of '1'.
  In file: /var/www/omp.archiving.zone/htdocs/lib/pkp/classes/xslt/XMLTypeDescription.inc.php
  At line: 126
  Stacktrace: 
  Server info:
   OS: Linux
   PHP Version: 5.5.9-1ubuntu4.13
   Apache Version: N/A
   DB Driver: mysql
   DB server version: 5.5.43-0ubuntu0.14.04.1
PHP message: omp has produced an error
  Message: WARNING: DOMDocument::schemaValidate(): Element '{http://ns.editeur.org/onix/3.0/reference}IDValue': '' is not a valid value of the atomic type '{http://ns.editeur.org/onix/3.0/reference}dt.NonEmptyString'.

  In file: /var/www/omp.archiving.zone/htdocs/lib/pkp/clas

asmecher · October 9, 2015, 4:27pm

Hi @Hembo_Pagi,

Can you review your submission’s cataloging metadata and re-save those forms? (They are available from the top toolbar within the workflow area.) I suspect your previously missing XSL setup caused some incomplete data to be saved, which is causing trouble with validation during export.

Regards,
Alec Smecher
Public Knowledge Project Team

Hembo_Pagi · October 12, 2015, 12:44pm

Did a new entry but same happened … can not attach cover image nor export the metadata. I am sure i do something wrong of have something not configured properly but can not figure out what. Keep tying.

asmecher · October 13, 2015, 5:31pm

Hi @Hembo_Pagi,

In Management > Settings > Workflow > Production, ensure that your “Publisher Code” field has been configured.

Regards,
Alec Smecher
Public Knowledge Project Team