Hi @Vitaliy
No I did not. Thank you for your help. It is now working.
Hi again @Vitaliy
The plugin successfully made galleys. However, the lens viewer does not show the HTML and XML formats? Is there any problem with lens viewer?
I receive this error in error_log every time I click on HTML:
Declaration of DocxToJatsPlugin::register($category, $path) should be compatible with LazyLoadPlugin::register($category, $path, $mainContextId = NULL) in /home/ccb/public_html/plugins/generic/docxConverter/DocxToJatsPlugin.inc.php on line 122
This is only cosmetic warning that will be fixed in the next release.
Lens Viewer requires certain tags to be present in XML for proper rendring.
You can try JATS Parser Plugin when a new release for 3.2 will be ready.
Thank you so much for your help @Vitaliy. I am eagerly waiting for the updates.
Hi
I have the same problem with the Docx converter. Is their any sultion.
[14-Oct-2022 10:59:01 UTC] PHP Fatal error: Uncaught Error: Class āZipArchiveā not found in /-----------plugins/generic/docxConverter/docxToJats/src/docx2jats/DOCXArchive.php:14
Stack trace:
#0 /home/public_html/lib/pkp/lib/vendor/composer/ClassLoader.php(571): include()
#1 /home/public_html/lib/pkp/lib/vendor/composer/ClassLoader.php(428): Composer\Autoload\includeFile(ā/home/n7ttt5zjvā¦ā)
#2 [internal function]: Composer\Autoload\ClassLoader->loadClass(ādocx2jats\DOCXAā¦ā)
#3 /home//public_html/plugins/generic/docxConverter/DOCXConverterHandler.inc.php(55): spl_autoload_call(ādocx2jats\DOCXAā¦ā)
#4 /home//public_html/lib/pkp/classes/core/PKPRouter.inc.php(395): ConverterHandler->parse(Array, Object(Request))
#5 /home//public_html/lib/pkp/classes/core/PKPPageRouter.inc.php(246): PKPRouter->_authorizeInitializeAndCallRequest(Array, Object(Request), Array, false)
#6 /home//public_html/lib/pkp/classes/core/Dispatcher.inc.php(144): PKPPageRouter->route(Object in /home//public_html/plugins/generic/docxConverter/docxToJats/src/docx2jats/DOCXArchive.php on line 14
Hi @Rohaan123,
Check if PHPās zip extension is installed and enabled.
Hi @Vitaliy, how are you doing? hopefully great!
This week I started experimenting with docxtojats (php one) through XAMPP (PHP 8.1.12), it was working fine but then today Iām getting some errors.
I am trying to convert the āsamples/input/msword_zotero.docxā file into āsamples/outputā but donāt know what I am doing wrong. Would you be kind to help me please?
Below are the error messages:
Tikinet@DESKTOP-UQTF7ER c:\docxToJats
php docxtojats.php samples/input/msword_zotero.docx samples/output/msword_zotero/msword_zotero.xml
PHP Fatal error: Uncaught ArgumentCountError: DOMNode::appendChild() expects exactly 1 argument, 0 given in C:\docxToJats\src\docx2jats\jats\Figure.php:57
Stack trace:
#0 C:\docxToJats\src\docx2jats\jats\Figure.php(57): DOMNode->appendChild()
#1 C:\docxToJats\src\docx2jats\jats\Document.php(208): docx2jats\jats\Figure->setContent()
#2 C:\docxToJats\src\docx2jats\jats\Document.php(57): docx2jats\jats\Document->extractContent()
#3 C:\docxToJats\docxtojats.php(72): docx2jats\jats\Document->__construct(Object(docx2jats\DOCXArchive))
#4 C:\docxToJats\docxtojats.php(51): writeOutput(āsamples/input/mā¦ā, Array, Array, āsamples/output/ā¦ā, false)
#5 {main}
thrown in C:\docxToJats\src\docx2jats\jats\Figure.php on line 57
Fatal error: Uncaught ArgumentCountError: DOMNode::appendChild() expects exactly 1 argument, 0 given in C:\docxToJats\src\docx2jats\jats\Figure.php:57
Stack trace:
#0 C:\docxToJats\src\docx2jats\jats\Figure.php(57): DOMNode->appendChild()
#1 C:\docxToJats\src\docx2jats\jats\Document.php(208): docx2jats\jats\Figure->setContent()
#2 C:\docxToJats\src\docx2jats\jats\Document.php(57): docx2jats\jats\Document->extractContent()
#3 C:\docxToJats\docxtojats.php(72): docx2jats\jats\Document->__construct(Object(docx2jats\DOCXArchive))
#4 C:\docxToJats\docxtojats.php(51): writeOutput(āsamples/input/mā¦ā, Array, Array, āsamples/output/ā¦ā, false)
#5 {main}
thrown in C:\docxToJats\src\docx2jats\jats\Figure.php on line 57
Adapting to power outages, but otherwise good
That looks like a type here: https://github.com/Vitaliy-1/docxToJats/blob/9c8579dd48bb6dda9957c65776afaf3c7f5969be/src/docx2jats/jats/Figure.php#L57
I believe, it should be
$captionNode->appendChild($title);
Can you test this change? Let me know if not
ŠŠ»ŠøŠµŃ Š±ŃŠ°ŃŠ°Š½. Every tech guyās cryptonite 
It worked like a charm! Š”ŠæŠ°ŃŠøŠ±Š¾!
Now, Iām trying to convert another article, it works partially because the .xml is generated, but without formatting style tags such as <bold>, <italic>, <sup>, <sub>.
Iām getting the following notice/error message:
# php docxtojats.php rus/1/1.docx rus/1/1.xml
PHP Notice: Cannot find document inside the archive by the path word/numbering.xml in C:\docxToJats\src\docx2jats\DOCXArchive.php on line 212
Notice: Cannot find document inside the archive by the path word/numbering.xml in C:\docxToJats\src\docx2jats\DOCXArchive.php on line 212
Any clues?
I guess Iāve figured something out.
The article in question was exported to .rtf and then saved as .docx, maybe this was the reason why DocxToJats was ignoring all formatting styles, once I created the file as .docx to start with then the convertion worked perfectly (even tho I still received the same error message)
PHP Notice: Cannot find document inside the archive by the path word/numbering.xml in C:\docxToJats\src\docx2jats\DOCXArchive.php on line 212
File with a .docx is an archive with specific rules regarding its structure, to which text editors should adhere when exporting the document. This particular message means that the file, which contains sequences for lists is missing but is specified in the relationship file.
Itās possible that the program, which exported/imported the document didnāt comply this rules. But if the problem persist, you can send me a file to explore. Let me know and Iāll send my email in the private message.
@Vitaliy Thank you very much for all the info!
Since it works (even tho displaying a notice) itās A-OK to me.
Iāve been messing around with your code and have made one improvement that I hope you can consider to implement in the near future (I tried to make the change directly on GitHub but Iām a gitnoob )
Itās in this file:
Line 158
I changed this:
$urlEl = $this->createAndAppendElement($elementCitationEl, 'ext-link', $url);
To this:
$urlEl = $this->createAndAppendElement($elementCitationEl, 'ext-link', $url, ['ext-link-type' => 'uri', 'xlink:href' => $url]);
So now, DocxToJats parses referenceās URL, generates the <ext-link> tag and the ext-link-type="uri" xlink:href="$url" attributes as well.
But Iād like to know a little bit more about the parsing process of zotero references and <xref> in a .docx.
The articles I work with generally wonāt use Vancouver reference standard, it uses mostly ABNT standard, that said, one rule of this standard is that citations in the text must be ($authorSurname, $year, e.g.: (Manzato, 2023)) but DocxToJats generates the <xref> content according to the xrefās RID. So in the XML <body> the xrefs end up looking like: <xref ref-type="bibr" rid="bib#">#</xref>
I tried to change the function to use the variables $surname and $year concatenated instead of $id but doesnāt work like that since the $id is the foreach condition to stop the loop.
So would you be so kind to help me figure out how can DocxToJats generate <xref> content as follows:
<xref ref-type="bibr" rid="bib#">($surname, $year)</xref>
Thanks in advance!
Yes, according to the NISO JATS documentation it should be right way.
Zotero and Mendeley donāt provide any documentation on how they add references to the document. E.g., Zotero plugin even uses different mechanisms in LibreOffice vs MS Word. I suspect this is because using different libraries for interactions with OOXML.
Iām interacting with DOM directly, so it shouldnāt be hard to retrieve this data but I really donāt know/remember where they store it. All the info that I know I found the empirical way 
So, it would require to make a sample file (with Zotero references), unpack it and inspect the content. Are you talking about Zotero plugin for MS Word or LibreOffice Writer or something different?
Zotero plugin for MS Word, Iāve had terrible experience with LibreOfficeās constant crashes.
Looking at your code further I think I understood some bits and pieces about how DocxToJats deal with Zotero entries and also was able to tweak the code a little bit further.
But first things first, I should of said this in the past but during the end of the year my life is a total rush but better later than neverā¦ Congratulations!!! 
Iām a big fan of your work man!! This automation has become a HUGE piece in my companieās XML development process, specially because these php libraries enables me to produce several XML files in a batch.
Itās so darn good that now Iām trying to adequate the output XML to match the SciELO standard, which is a little bit different.
At the moment Iāve made changes to Reference.php only, simple things like:
Changes from:
class Reference extends \DOMElement {
public const JATS_REF_ID_PREFIX = 'bib';
to:
class Reference extends \DOMElement {
public const JATS_REF_ID_PREFIX = 'b';
changing the <ref id="bib1"> to <ref id="b1"> which also made changes to the <xref rid=""> value as well (as documented by SciELO, they require citations and bib. ref. ids to be like āb1, b2, b3ā¦ā)
Also tried to make DocxToJats generate entries for translators in a reference (works for Zotero references, raw text references I havenāt tested) by adding the piece of code below:
$translator = $this->getStdClassPropertyValue($data, 'translator');
if ($translator && !$containerAuthors) {
$this->extractCSLNames($elementCitationEl, $translator, 'author');
$this->createAndAppendElement($elementCitationEl, 'role', 'Tradutor');
}
This addition creates the <person-group> tag and itās child tags as well, but as per SciELOās documentation, translators, reviewers, etc in a bib. ref. must be marked as person-group-type="author" with a tag <role> as a <person-group> child tag, like the example below:
<person-group person-group-type="author">
<name>
<surname>Bezerra</surname>
<given-names>Paulo</given-names>
</name>
<role>Tradutor</role>
</person-group>
but my code is outputting it like:
<person-group person-group-type="author">
<name>
<surname>Bezerra</surname>
<given-names>Paulo</given-names>
</name>
</person-group>
<role>Tradutor</role>
Iām also trying to find out a way to make DocxToJats generate bibr xrefs like:
<xref ref-type="bibr" rid="b1">SURNAME, YEAR</xref> instead of <xref ref-type="bibr" rid="b1">1</xref>, <xref ref-type="bibr" rid="b2">2</xref>, <xref ref-type="bibr" rid="b3">3</xref> etcā¦
I hope you can help me figure out how to code it properly (please bear with me, the last time I Read/Write php code was back in 2002 and havenāt touch a single php file ever since )
1 Like
Iām glad that you finding the parser useful
Unfortunately, Iāve considered different citation styles only for transformation to HTML (in JATS Parser Plugin), for presentation purposes. So, indeed, it requires some tweaking.
The part where JATS in-text citation is handled for MS Word is here: https://github.com/Vitaliy-1/docxToJats/blob/d976ab1b42e338aeba261718c4cf3a981afb74e2/src/docx2jats/jats/Par.php#L27
Probably, the best would be to find reference by ID, get authors data and replace the text. Something like:
$references = $content->getOwnerDocument->getReferences();
foreach ($content->getRefIds() as $key => $id) {
$ref = $references[$id]; // this is docx2jats\objectModel\Document\Reference containing reference, in this case in [CSL](https://citationstyles.org) format
if ($csl = $ref->getCSL()) {
$firstAuthor = $csl->author[0]->family; // you'll need to extract the data, like author(s) and year, from this already decoded CSL. The year part is tricky because it can be in structured or raw format
...
}
$refEl = $this->ownerDocument->createElement('xref', $firstAuthor ?? $id);
$refEl->setAttribute('ref-type', 'bibr');
$refEl->setAttribute('rid', Reference::JATS_REF_ID_PREFIX . $id);
$this->appendChild($refEl);
if ($key !== $lastKey) {
$refEl = $this->ownerDocument->createTextNode(' ');
$this->appendChild($refEl);
}
}
Regarding another question, Iāll respond once test that part