Error from 2.4.8 to 3.0.2

ipa · March 11, 2017, 10:27pm

I have tried by localhost way in order to chek better the errors. Then I have done the upgrade by the tool and the only error that I can see is the “unserialize(): Error at offset bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php”"

I attach the process log and the error log.

Thank you very much.

C:\wamp64\www\ojs3>php tools/upgrade.php upgrade
[pre-install]
[load: upgrade.xml]
[version: 3.0.2.0]

[code: Installer Installer::syncSeriesAssocType]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics2.xml]
[data: dbscripts/xml/upgrade/3.0.0_preupdate.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptTimedViews.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_adaptReferrals.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptBooksForReview.xml]
[data: dbscripts/xml/upgrade/remove_timed_views_bots.xml (skipped)]

[code: Installer Installer::migrateCounterPluginUsageStatistics (skipped)]

[code: Installer Installer::migrateTimedViewsUsageStatistics (skipped)]

[code: Installer Installer::migrateDefaultUsageStatistics (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration2.xml]
[data: dbscripts/xml/upgrade/2.4.0_postCounterMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postTimedViewsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_preupdate_commentsToEditor.xml]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/gifts.xml]
[schema: lib/pkp/xml/schema/mutex.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: dbscripts/xml/ojs_schema.xml]
[data: dbscripts/xml/indexes.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type_metrics.xml]
[data: dbscripts/xml/upgrade/3.0.0_settings.xml]

[code: Installer Installer::migrateArticleMetadata]
[data: dbscripts/xml/upgrade/3.0.0_update.xml]

[code: Installer Installer::clearDataCache]

[code: Installer Installer::migrateUserRoles]

C:\wamp64\www\ojs3>php tools/upgrade.php check
Code version: 3.0.2.0
Database version: 2.4.8.1
Latest version: 2.4.8.1
Database version is older than code version
Run “tools/upgrade.php upgrade” to update

The errors are:
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of DevelopedByBlockPlugin::getSeq() should be compatible with BlockPlugin::getSeq($contextId = NULL) in C:\wamp64\www\ojs3\plugins\blocks\developedBy\DevelopedByBlockPlugin.inc.php on line 20
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of DevelopedByBlockPlugin::getBlockContext() should be compatible with BlockPlugin::getBlockContext($contextId = NULL) in C:\wamp64\www\ojs3\plugins\blocks\developedBy\DevelopedByBlockPlugin.inc.php on line 20
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of DevelopedByBlockPlugin::getEnabled() should be compatible with BlockPlugin::getEnabled($contextId = NULL) in C:\wamp64\www\ojs3\plugins\blocks\developedBy\DevelopedByBlockPlugin.inc.php on line 20
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of AbntCitationPlugin::fetchCitation() should be compatible with CitationPlugin::fetchCitation($article, $issue, $journal) in C:\wamp64\www\ojs3\plugins\citationFormats\abnt\AbntCitationPlugin.inc.php on line 20
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of AbntCitationPlugin::manage() should be compatible with Plugin::manage($args, $request) in C:\wamp64\www\ojs3\plugins\citationFormats\abnt\AbntCitationPlugin.inc.php on line 20
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of PubIdImportExportPlugin::display() should be compatible with ImportExportPlugin::display($args, $request) in C:\wamp64\www\ojs3\plugins\importexport\pubIds\PubIdImportExportPlugin.inc.php on line 433
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of PKPOAIMetadataFormat_DC::toXml() should be compatible with OAIMetadataFormat::toXml($record, $format = NULL) in C:\wamp64\www\ojs3\lib\pkp\plugins\oaiMetadataFormats\dc\PKPOAIMetadataFormat_DC.inc.php on line 80
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of OAIMetadataFormat_MARC::toXml() should be compatible with OAIMetadataFormat::toXml($record, $format = NULL) in C:\wamp64\www\ojs3\plugins\oaiMetadataFormats\marc\OAIMetadataFormat_MARC.inc.php on line 46
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of OAIMetadataFormat_MARC21::toXml() should be compatible with OAIMetadataFormat::toXml($record, $format = NULL) in C:\wamp64\www\ojs3\plugins\oaiMetadataFormats\marcxml\OAIMetadataFormat_MARC21.inc.php on line 46
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of OAIMetadataFormat_NLM::toXml() should be compatible with OAIMetadataFormat::toXml($record, $format = NULL) in C:\wamp64\www\ojs3\plugins\oaiMetadataFormats\nlm\OAIMetadataFormat_NLM.inc.php on line 277
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of OAIMetadataFormat_RFC1807::toXml() should be compatible with OAIMetadataFormat::toXml($record, $format = NULL) in C:\wamp64\www\ojs3\plugins\oaiMetadataFormats\rfc1807\OAIMetadataFormat_RFC1807.inc.php on line 107
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Strict Standards: Declaration of PayPalPlugin::displayPaymentSettingsForm() should be compatible with PKPPaymethodPlugin::displayPaymentSettingsForm(&$params, $smarty) in C:\wamp64\www\ojs3\plugins\paymethod\paypal\PayPalPlugin.inc.php on line 354
[11-Mar-2017 22:45:55 Europe/Madrid] PHP Deprecated: Non-static method Version::fromString() should not be called statically, assuming $this from incompatible context in C:\wamp64\www\ojs3\lib\pkp\classes\install\Installer.inc.php on line 243
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:45:59 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be assigned by reference in C:\wamp64\www\ojs3\lib\pkp\classes\db\DBDataXMLParser.inc.php on line 122
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:00 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:14 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:14 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:14 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:14 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:14 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:17 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:17 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:17 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:17 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:17 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:17 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:20 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:20 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:21 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:25 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:29 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:29 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:29 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:29 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:29 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:29 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:32 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:32 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:32 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:32 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:32 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:34 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:39 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:39 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:39 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:42 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:42 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:42 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:42 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:43 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:44 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:44 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:44 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:44 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:46 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:46 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:46 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:46 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:46 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:46:46 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in
[11-Mar-2017 22:48:03 Europe/Madrid] PHP Strict Standards: Only variables should be passed by reference in C:\wamp64\www\ojs3\lib\pkp\lib\adodb\adodb-xmlschema.inc.php on line 267
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionSubjectDAO::build() should be compatible with ControlledVocabDAO::build($symbolic, $assocType = 0, $assocId = 0) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionSubjectDAO.inc.php on line 21
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionDisciplineDAO::build() should be compatible with ControlledVocabDAO::build($symbolic, $assocType = 0, $assocId = 0) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionDisciplineDAO.inc.php on line 157
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionAgencyDAO::build() should be compatible with ControlledVocabDAO::build($symbolic, $assocType = 0, $assocId = 0) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionAgencyDAO.inc.php on line 154
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionLanguageDAO::build() should be compatible with ControlledVocabDAO::build($symbolic, $assocType = 0, $assocId = 0) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionLanguageDAO.inc.php on line 155
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Notice: unserialize(): Error at offset 222 of 1440 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionLanguageEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionLanguageEntryDAO.inc.php on line 20
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionAgencyEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionAgencyEntryDAO.inc.php on line 50
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Notice: unserialize(): Error at offset 51 of 496 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Notice: unserialize(): Error at offset 3216 of 3433 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Notice: unserialize(): Error at offset 96 of 4051 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Notice: unserialize(): Error at offset 347 of 1494 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Notice: unserialize(): Error at offset 51 of 496 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionSubjectEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionSubjectEntryDAO.inc.php on line 50
[11-Mar-2017 22:49:22 Europe/Madrid] PHP Strict Standards: Declaration of SubmissionDisciplineEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in C:\wamp64\www\ojs3\lib\pkp\classes\submission\SubmissionDisciplineEntryDAO.inc.php on line 50
[11-Mar-2017 22:49:23 Europe/Madrid] PHP Notice: unserialize(): Error at offset 51 of 492 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:23 Europe/Madrid] PHP Notice: unserialize(): Error at offset 50 of 351 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:49:23 Europe/Madrid] PHP Notice: unserialize(): Error at offset 72 of 3766 bytes in
[11-Mar-2017 22:52:05 Europe/Madrid] PHP Notice: unserialize(): Error at offset 51 of 504 bytes in C:\wamp64\www\ojs3\lib\pkp\classes\db\DAO.inc.php on line 347
[11-Mar-2017 22:57:58 Europe/Madrid] PHP Deprecated: Non-static method ScheduledTaskHelper::checkFrequency() should not be called statically, assuming $this from incompatible context in C:\wamp64\www\ojs3\lib\pkp\plugins\generic\acron\PKPAcronPlugin.inc.php on line 315

asmecher · March 13, 2017, 11:53pm

Hi @ipa,

I don’t see anything relevant there – but I’d suggest checking your php.ini (or run php -i) to see if there is an execution time limit or memory limit that you might be running into.

Note also that on some servers the php.ini is different for command-line based PHP execution. If in doubt, use php -i to check whether settings changes are taking effect.

Regards,
Alec Smecher
Public Knowledge Project Team

ipa · March 19, 2017, 9:24pm

Hi @asmecher,

I am using windows with WAMP. The ph.ini file I have max_execution_time → 99999 and memory_limit ->128M. When I chek by “php -i” max_execution_time → 0 and memory_limit ->128M. In the PHP documentation say “When running PHP from the command line the default setting is 0.” Is ther some test that I could do?

thank you very much.

asmecher · March 22, 2017, 11:34pm

Hi @ipa,

Hmm, and just to verify, the script stops of its own accord – you’re not terminating it or anything? (Depending on how much content you have, the upgrade process can take an extremely long time to run.)

I would also suggest increasing your memory_limit upwards, at least temporarily. The upgrade can take a lot of memory as well.

Regards,
Alec Smecher
Public Knowledge Project Team

ipa · April 3, 2017, 11:06pm

Hi @ipa,

I have tried again with XAMP, I modified all parameters of memory limits, etc… I used “php tool/upgrade.php upgrade” but It stops at an unserialize error. Any recomendations? thank you very much.

[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics2.xml]
[data: dbscripts/xml/upgrade/3.0.0_preupdate.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptTimedViews.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_adaptReferrals.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptBooksForReview.xml]
[data: dbscripts/xml/upgrade/remove_timed_views_bots.xml (skipped)]

[code: Installer Installer::migrateCounterPluginUsageStatistics (skipped)]

[code: Installer Installer::migrateTimedViewsUsageStatistics (skipped)]

[code: Installer Installer::migrateDefaultUsageStatistics (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration2.xml]
[data: dbscripts/xml/upgrade/2.4.0_postCounterMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postTimedViewsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_preupdate_commentsToEditor.xml]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/gifts.xml]
[schema: lib/pkp/xml/schema/mutex.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: dbscripts/xml/ojs_schema.xml]
[data: dbscripts/xml/indexes.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type_metrics.xml]
[data: dbscripts/xml/upgrade/3.0.0_settings.xml]

[code: Installer Installer::migrateArticleMetadata]
PHP Notice: unserialize(): Error at offset 222 of 1440 bytes in C:\xampp\htdocs
\ojs\lib\pkp\classes\db\DAO.inc.php on line 347

more errors unserialize()…

Notice: unserialize(): Error at offset 51 of 496 bytes in C:\xampp\htdocs\ojs\li
b\pkp\classes\db\DAO.inc.php on line 347
PHP Notice: unserialize(): Error at offset 51 of 496 bytes in C:\xampp\htdocs\o
js\lib\pkp\classes\db\DAO.inc.php on line 347

Notice: unserialize(): Error at offset 51 of 496 bytes in C:\xampp\htdocs\ojs\li
b\pkp\classes\db\DAO.inc.php on line 347
[data: dbscripts/xml/upgrade/3.0.0_update.xml]

[code: Installer Installer::clearDataCache]

[code: Installer Installer::migrateUserRoles]
PHP Notice: unserialize(): Error at offset 222 of 1440 bytes in C:\xampp\htdocs
\ojs\lib\pkp\classes\db\DAO.inc.php on line 347

Notice: unserialize(): Error at offset 222 of 1440 bytes in C:\xampp\htdocs\ojs
lib\pkp\classes\db\DAO.inc.php on line 347

asmecher · April 4, 2017, 12:02am

Hi @ipa,

Have you inadvertently modified your database encoding or the character set parameters in config.inc.php? That may cause the unserialize notices.

Regards,
Alec Smecher
Public Knowledge Project Team

ipa · March 19, 2018, 11:05pm

Hi @asmecher,

After solving some problems of PHP versions on my server, I return to the task of updating OJS from 2.4.8 to 3.1.0. I have problems again. I am really apreciate if you could help me. The process stop with the message “

There are no readable files in this directory tree. Are safe mode or open_basedir active?

”

I attach the full process log and the error log

[~/public_html/test_ojs31]# php tools/upgrade.php upgrade
[pre-install]
[load: upgrade.xml]
[version: 3.1.0.1]

[code: Installer Installer::syncSeriesAssocType]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_preupdate_usageStatistics2.xml (skipped)]

[code: Installer Installer::removeReviewEntries]
[data: dbscripts/xml/upgrade/3.0.0_preupdate.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptTimedViews.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_adaptReferrals.xml]
[data: dbscripts/xml/upgrade/3.0.0_adaptBooksForReview.xml]
[data: dbscripts/xml/upgrade/remove_timed_views_bots.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_preupdate_commentsToEditor.xml]

[code: Installer Installer::concatenateIntoAbout]

[code: Installer Installer::concatenateIntoMasthead]
[data: dbscripts/xml/upgrade/3.1.0_preupdate_review_assignments.xml]
[data: dbscripts/xml/upgrade/3.1.0_preupdate_notes.xml]
[data: dbscripts/xml/upgrade/3.1.0_preupdate_payments.xml]
[schema: lib/pkp/xml/schema/common.xml]
[schema: lib/pkp/xml/schema/log.xml]
[schema: lib/pkp/xml/schema/announcements.xml]
[schema: lib/pkp/xml/schema/scheduledTasks.xml]
[schema: lib/pkp/xml/schema/temporaryFiles.xml]
[schema: lib/pkp/xml/schema/metadata.xml]
[schema: lib/pkp/xml/schema/reviews.xml]
[schema: lib/pkp/xml/schema/reviewForms.xml]
[schema: lib/pkp/xml/schema/controlledVocab.xml]
[schema: lib/pkp/xml/schema/submissions.xml]
[schema: lib/pkp/xml/schema/submissionFiles.xml]
[schema: lib/pkp/xml/schema/notes.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/genres.xml]
[schema: lib/pkp/xml/schema/tombstone.xml]
[schema: lib/pkp/xml/schema/rolesAndUserGroups.xml]
[schema: lib/pkp/xml/schema/metrics.xml]
[schema: lib/pkp/xml/schema/views.xml]
[schema: lib/pkp/xml/schema/libraryFiles.xml]
[schema: lib/pkp/xml/schema/navigationMenus.xml]
[schema: dbscripts/xml/ojs_schema.xml]
[data: dbscripts/xml/indexes.xml]

[code: Installer Installer::migrateCounterPluginUsageStatistics (skipped)]

[code: Installer Installer::migrateTimedViewsUsageStatistics (skipped)]

[code: Installer Installer::migrateDefaultUsageStatistics (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postUsageStatsMigration2.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postCounterMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/2.4.0_postTimedViewsMigration.xml (skipped)]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type.xml]
[data: dbscripts/xml/upgrade/3.0.0_change_assoc_type_metrics.xml]
[data: dbscripts/xml/upgrade/3.0.0_settings.xml]

[code: Installer Installer::installDefaultGenres]

[code: Installer Installer::migrateArticleMetadata]
[data: dbscripts/xml/upgrade/3.0.0_update.xml]

[code: Installer Installer::clearDataCache]

[code: Installer Installer::migrateUserRoles]

[code: Installer Installer::fixReviewForms]

[code: Installer Installer::htmlifyEmailTemplates]
[note: docs/release-notes/README-BEACON]

[code: Installer Installer::installEmailTemplate]

[code: Installer Installer::installEmailTemplate]
[data: dbscripts/xml/upgrade/3.0.0_scheduledTasks.xml]

[code: Installer Installer::localizeCustomBlockSettings]

[code: Installer Installer::convertEditorDecisionNotes]

[code: Installer Installer::convertQueries]

[code: Installer Installer::migrateFiles]

[code: Installer Installer::convertSupplementaryFiles]

There are no readable files in this directory tree. Are safe mode or open_basedir active?

#

php tools/upgrade.php check
Code version: 3.1.0.1
Database version: 2.4.8.1
Latest version: 3.1.0.1
Database version is older than code version

error_log (I delete the repeated errors/warnings):
[19-Mar-2018 17:18:09 UTC] ojs2: DB Error: Unknown column ‘context_id’ in ‘on clause’
[19-Mar-2018 20:31:05 UTC] ojs2: DB Error: Unknown column ‘context_id’ in ‘on clause’
[19-Mar-2018 20:31:05 UTC] ojs2: DB Error: Unknown column ‘context_id’ in ‘on clause’
[19-Mar-2018 20:56:43 UTC] WARNING: Unable to find a match for “40-172-1-RV.pdf” in “/home/wwwhp/ojsdata_test/journals/11//articles/40/”. Skipping this file.
[19-Mar-2018 20:56:48 UTC] PHP Strict Standards: Only variables should be assigned by reference in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/db/DBDataXMLParser.inc.php on line 122
[19-Mar-2018 21:04:36 UTC] PHP Strict Standards: Declaration of SubmissionLanguageEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/submission/SubmissionLanguageEntryDAO.inc.php on line 20
[19-Mar-2018 21:04:36 UTC] PHP Strict Standards: Declaration of SubmissionKeywordEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/submission/SubmissionKeywordEntryDAO.inc.php on line 45
[19-Mar-2018 21:04:36 UTC] PHP Strict Standards: Declaration of SubmissionAgencyEntryDAO::getByControlledVocabId() should be compatible with ControlledVocabEntryDAO::getByControlledVocabId($controlledVocabId, $rangeInfo = NULL, $filter = NULL) in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/submission/SubmissionAgencyEntryDAO.inc.php on line 44
[19-Mar-2018 21:47:56 UTC] PHP Strict Standards: Declaration of SubmissionFileDAO::fromRow() should be compatible with PKPSubmissionFileDAO::fromRow($row, $fileImplementation) in /home/wwwhp/public_html/test_ojs31/classes/article/SubmissionFileDAO.inc.php on line 23
[19-Mar-2018 21:50:30 UTC] WARNING: Unable to find a match for “2476-9378-1-SM.docx” in “/home/wwwhp/ojsdata_test/journals/25//articles/2476/”. Skipping this file.
[19-Mar-2018 21:50:57 UTC] PHP Warning: assert(): Assertion failed in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 373
[19-Mar-2018 21:50:57 UTC] ojs2: There are no readable files in this directory tree. Are safe mode or open_basedir active?
[19-Mar-2018 21:58:42 UTC] PHP Deprecated: Non-static method VersionCheck::getLatestVersion() should not be called statically, assuming $this from incompatible context in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/cliTool/UpgradeTool.inc.php on line 71
[19-Mar-2018 21:58:42 UTC] PHP Deprecated: Non-static method VersionCheck::getCurrentDBVersion() should not be called statically, assuming $this from incompatible context in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/cliTool/UpgradeTool.inc.php on line 164
[19-Mar-2018 21:58:42 UTC] PHP Deprecated: Non-static method VersionCheck::getCurrentCodeVersion() should not be called statically, assuming $this from incompatible context in /home/wwwhp/public_html/test_ojs31/lib/pkp/classes/cliTool/UpgradeTool.inc.php on line 165

thank you very much

asmecher · March 22, 2018, 6:09pm

Hi @ipa,

Have a look e.g. at this thread. If that doesn’t resolve the issue, describe what you’ve tried here and what the result was.

Regards,
Alec Smecher
Public Knowledge Project Team

ipa · March 26, 2018, 10:39am

Hi @asmecher,

After modifying the Null value in section_id from articles, it works!!! Thank you very much and congratulations to PKP and you, for your great work.

Regards,

asmecher · March 26, 2018, 3:30pm

Hi @ipa,

Great, glad to hear it’s working!

Regards,
Alec Smecher
Public Knowledge Project Team

murilodbva · April 6, 2022, 8:01pm

Hello, I’d like to know if @ipa only removed the registers, where section_id is NULL from articles.
I think the “articles” he said, in truth is submissions.